I've had all kinds of issues with my sequences but I'm so happy to say that last night, for the first time everything ran perfectly. I woke up refreshed (even though I kept an eye on the iPad with TeamViewer) on all every once in a while and there it was, beautiful exposures waiting for me! The issues with the Meridian Flip and Autofocus solved. Ahhh now just fingers crossed to get a similar result every clear night! I did however notice that I should have had more exposures than I ended up with and I had my autofocus set to run every 1 degree difference, would this option restart my frame? I had a lot of temperature drop yesterday, it went from 15 C to 3 C from beginning to end of session.
Thanks again!