PROBLEM SOLVED!
I'm happy to report that my auto focus issues have been resolved, I am now getting beautiful V or U graphics with perfectly focused stars on 2 of my telescopes. I am not sure exactly what the issue was because there were too many things that I changed. My main suspicion lies on a bad physical connection with stepper's gears, then I was running a Rigel stepper with a Microtouch controller, I changed to the Rigel but still need to test back on the Microtouch now that I have everything running just to make sure that changes anything or not. The third thing that I changed was the backlash settings which I was not aware I had to use (I read the manual many times, I just don't think it stands out enough to get my attention so I somehow missed that).
Anyway, thank you so much everyone who took the time to reply!